Tuesday 30 October 2018

Reflections on field-trial based PhD research


Sustainable agriculture requires the sustainable production of high yields and the minimisation of environmental pollution.  Researchers are required to identify the means by which farmers can best manipulate the complex agro-ecosystem.  For the sustainable intensification of agriculture to be achieved, the behaviour of farmers will have to alter from the current, unsustainable course.  For arable farmers, this might mean the adoption of novel crop varieties and agrochemicals, an increased reliance upon and contribution to big data, changes to crop rotations and changes to tillage, all against and increasingly changeable climate.  Behind those advances will be crop geneticists, crop protection chemists, computer scientists, engineers, soil scientists and many more researchers which farmers will never meet.  This blog is a reflection on doing soil science via field trials, specifically the situation where a PhD students sets up and manages a field trial only used for their research.

My soil science and agriculture PhD was partly field based.  That meant that I had field plots, hosted and managed by a farmer, in which experiments were established and sampled over the course of the three-year PhD.  Three years is not a long time in agricultural field experiments.  Every year is exception in some sense: a dry autumn, an early frost, a lack of frost, a wet and mild spring, the list goes on and data from every year ends up couched in a weather-related caveat.  The research was carried out on one farm, with one soil type which differs greatly from much of the UK, with soil properties also varying across the field and across plots.  I was hoping to observe changes to soil properties which might take over 3 years to accumulate.  All of this raises the question “why use a field trial?”.  It comes back to two pieces of the sustainable intensification puzzle: 1) soils are complex which means that it is not always possible to make predictions based on studies of simplified systems; and 2), sustainable intensification will require the changing of the behaviour of farmers and farmers trust field trials more than laboratory or glasshouse studies (see point 1).  My PhD left me with an appreciation of both the value and the difficulty of conducting soil science via field trials.  This difficulty only increases when you consider publishing scientific research in academic journals.  Because of the variability inherent in field trials, multi-year studies at multiple sites are the gold standard.  If you’re investigating changes that are going to take multiple years to develop (i.e. changes to soil structure following the cessation of tillage) then this will only lengthen the project (unless you can find field sites differing only in the treatment you are interested in).  The end result is that the time taken between beginning a field trial and collecting your last set of data will be at least three years, preferably five or more.  This is slow soil science.

At the other end of the scale, it’s possible to conduct rapid soil science, independently of field trials.  Soil can be sieved and mixed to reduce the variability that plagues field studies when investigating soil physics, or sterilised and re-inoculated with pre-determined taxa when investigating soil biological communities.  Basic questions can be investigated with techniques including x-ray computed tomography (to investigate soil physics), next generation sequencing (to investigate soil biology) and isotope tracing methodologies (to investigate nutrient cycling) to name a few.  Important and interesting questions can be investigated via experiments lasting a period of hours to weeks, presenting opportunities for the publication of research articles at a much faster rate than is possible where a researcher establishes and samples from a field trial.  This is the high-speed science.  The trade-off, of course, is that this science in isolation is unlikely to sway the actions of farmers, a bridge is required, bringing us back to field trials.

Many PhD projects are based around field trials which are set up specifically for that piece of research and will last for a maximum of three years.  Carrying out such a PhD gives a young scientist a great insight into how agriculture actually works, what problems are faced by farmers and the tools farmers have to tackle these problems.  There is a high chance that the research will have an effect in the real world.  But they are challenging, placing the researcher at the mercy of the weather, the in-field variability and the rate of change of soil processes in the field.  One solution is to combine both fast and slow science within a PhD.  To investigate the same question in a simplified system in a laboratory and also in the field.  It is certainly appealing but obviously requires more work which brings me on the issue of supporting research.

Governments fund research because the outcomes benefit everyone.  Better crop varieties mean high yields benefitting farmers and the public (who pay less for food) whilst field buffers can provide a public good by improving water quality and any reduction in net greenhouse gas emissions benefits everyone.  A field trial cannot only be used to investigate the generation of public goods, it is a public good for the scientific community (a source of experimental material) in itself.  Field trials don’t just benefit farmers by demonstrating what does and does not work, they are also a hugely valuable resource for other scientists (who were not necessarily involved in their planning or running) which utilise them in previously unplanned ways.  Where an experiment in a simplified system shows an interesting result, one of the next steps is to investigate this in a more complex system i.e. in the field.  The value of a well designed, long-term field experiment which provides suitable treatments and is ready for use is obvious.  The UK government recognises this value, i.e. funding Rothamsted Research’s field trials, from the short to the very, very long (175 years), via the BBSRC. 
As a field trial is an extremely valuable resource, I think it is worth asking if the one-PhD, one-field trial model is an efficient one?  Indulging ourselves for a moment, I’d suggest, a six-year field trial is far more valuable than two three-year field trials, that two PhDs sharing two field trials is both more efficient and less vulnerable to a problem at a single field site, and that a well-designed field study could support more than one PhD (with the costs associated with running a field trial shared across projects), especially where both fast and slow research were carried out.  Obviously, the funding is the sticking point.  Getting funding for a single PhD is hard enough, securing funding for two at the same time is almost never an option.  However, whilst three years for a PhD sounds like a long time, it’s not when it comes to field trials.

For the record, I really enjoyed the field-based parts of my PhD.  They gave me a great introduction into arable agriculture and produced some interesting results.  This is just a note that when it comes to a field-trial based PhD, it pays to be cautious.  The error bars will be big your control of experiments will be low.

P.S. After writing this I came across a scientific article titled “The importance of long‐term experiments in agriculture: their management to ensure continued crop production and soil fertility; the Rothamsted experience” (Johnston and Poulton, 2018) which can be found here (the article is open access meaning anyone can read it for free, a true public good).  I’d recommend it if you are interested in a detailed discussion of the value of long-term experiments including specific examples, rather than the ramblings of a postdoc.

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